Mini Apple Crumble Cheesecakes
Mini Apple Crumble Cheesecakes are the perfect fall cheesecake recipe with a buttery, salty pretzel crust and dreamy, creamy cheesecake filling topped with a sweet and crunchy apple crumble. It’s a must make if you love cheesecake and a classic apple crumble!

Mini Apple Crumble Cheesecakes
One of my favorite fall traditions is taking my daughter to a local apple orchard and spending a couple hours picking apples, enjoying the last of the warm fall weather and, of course, grabbing some fresh apple cider when we’re done.
We always come home with WAY too many apples – this last trip, we came home with 40lbs!!! So, of course, I need to get creative about how we’re going to enjoy all of those apples… and I think today’s Mini Apple Crumble Cheesecakes is going to go on our permanent fall rotation!
I love the contrast of salty and sweet, buttery and creamy, as well as the crunchy pretzel crust and oat topping with the soft, baked apples and silky, smooth cheesecake. It’s incredibly satisfying and the perfect single-serving treat to bring along to fall get-togethers or serve up as a family treat.
(Even better, these mini cheesecakes are super simple to make with the kids!)
I hope you love these simple apple crumble cheesecakes as much as we do – they might become a family tradition of your own!
— Jennifer
PS – check out more of our mini cheesecake recipes here. Like our S’mores mini cheesecakes, mini pumpkin cheesecakes, mini chocolate chip cheesecakes, or this amazing no-bake mini lemon cheesecake recipe.

Apple Crumble Cheesecake Ingredients
For your convenience, I’ve provided ad links to supplies used to make this recipe; see our disclosure policy here.
For the Pretzel Crust:
- Pretzel crumbs
- Melted butter
- White granulated sugar
For the Cheesecake:
- Cream cheese, room temperature
- White granulated sugar
- Full-fat sour cream
- Egg
- Vanilla extract
For the Apple Crumble Topping:
- Apple
- White granulated sugar
- Ground cinnamon
- Light brown sugar, packed
- Rolled oats
- All-purpose flour
- Cold butter
Scroll down to the printable recipe card for full measurements.
Tip: beat the cream cheese on it’s own before proceeding with the rest of the cheesecake to work out any lumps and ensure your cheesecake is silky smooth.
Helpful Kitchen Tools
- Muffin Tin
- Muffin Liners
- Food Processor
- Measuring Cups and Spoons
- Small Microwave-safe Bowls
- Electric Mixer
- Sharp Kitchen Knife
- Pastry Cutter

How to Make Mini Apple Crumble Cheesecakes
To Prep: Preheat oven to 350F. Line a muffin tin with paper liners and spray with cooking spray.
- Make the pretzel crust: pulse pretzels in a food processor until they resemble fine crumbs;
- Combine the pretzel crumbs, melted butter and white sugar to form the crust.
- Scoop 1 Tablespoon of the pretzel mixture into each muffin cavity and press down with the back of a spoon. Bake 5 minutes.
- Whip up our simple cheesecake: Beat together the cream cheese, sugar, sour cream, egg and vanilla extract. Scoop overtop of the baked pretzel crusts and bake 20 minutes.

Rest: The cheesecakes will need to set up overnight (or for at least 4 hours) before proceeding with the rest of the recipe.
Preheat oven to 350F. Grease a small casserole dish and set aside.
- Wash and core 1 apple, peel if desired. Finely dice.
- Make the apple crumble by combining the diced apple with white and brown sugars, cinnamon, rolled oats, flour and butter.
- Bake the crumble for 15 minutes, then allow to cool.
- Top each mini cheesecake with a scoop of the apple crumble.

Topping Ideas For Cheesecake
- Drizzle with caramel sauce
- Top with a little sea salt
- Drizzle with butterscotch
- Pair with a scoop of ice cream
- Sprinkle with your favorite nuts

Mini Apple Crumble Cheesecake FAQs
Can I use a Classic Graham Cracker Crust? You are more than welcome to use a classic mini graham cracker crust. Just mix up and press into the mini tins just as you would the pretzel crust.
How to store Mini Apple Crumble Cheesecakes? Your cheesecakes need to be stored in the refrigerator. Once the apple crumble cheesecakes are done being cooked, let cool. Then cover and place in the fridge and chill to fully set up.
Make sure your cheesecakes are stored in a proper container or they will take on the odours of the fridge.
How long will they last? Cheesecakes can last for around 5 days in the fridge. They are best when eaten within a few days of being made. The apples will go bad before anything else on the cheesecakes.
Can you Freeze Apple Crumble Cheesecake Cupcakes? If you don’t plan to eat these right away, you can freeze leftovers. I would recommend leaving the crumble off the top when freezing these apple crumble cheesecake cupcakes.
Place the cheesecakes still in their cupcake papers in a freezer friendly container and store for up to three months. Then thaw in the fridge for an overnight thaw.
Or you can let them sit on the counter for about 30 minutes to an hour.
Can I Make These In Advance? Go right ahead and make these a day before you plan to serve them up. It is a great way for your cheesecakes to fully set up! Then just store properly in the fridge and then serve up one incredible dessert the day you are ready.

More Amazing Apple Dessert Recipes:
- Instant Pot Caramel Apple Cheesecake
- Apple Dump Cake from In the Kids’ Kitchen
- Apple Pie Dip from The Soccer Mom Blog
- Caramel Apple Cookies from Sugar, Spice and Glitter
- Candy Corn Apples from The Soccer Mom Blog
- Apple Coffee Cake from Sugar, Spice and Glitter

Mini Apple Crumble Cheesecakes Recipe (Printable Recipe Card)
If you tried this recipe and loved it too, please rate it! We’d also love to hear your thoughts in the comments.

Mini Apple Crumble Cheesecakes
Ingredients
Crust
- 3/4 cup pretzel crumbs
- 1/4 cup melted butter
- 2 tablespoons granulated sugar
Cheesecake
- 8 ounces cream cheese room temperature
- 1/4 cup granulated sugar
- 2 tablespoons full-fat sour cream
- 1 large egg
- 1/2 teaspoon vanilla extract
Crumble Topping
- 1 apple
- 1 tablespoon granulated sugar
- 1/2 teaspoon ground cinnamon
- 2 tablespoons light brown sugar packed
- 2 tablespoons rolled oats
- 2 tablespoons all-purpose flour
- 2 tablespoons cold butter
Instructions
Crust
- Line a muffin tin with paper liners and spray with cooking spray. Set aside.
- Preheat oven to 350 degrees F.
- Add the pretzels to a food processor and pulse until the pretzels are fine crumbs.
- In a large bowl, add the pretzel crumbs, butter, and sugar. Stir to coat the pretzel crumbs with the butter.
- Scoop a little more than 1 tablespoon of crust into each lined cavity and press down with the back of the spoon.
- Bake for 5 minutes and remove from oven to cool.
Cheesecake
- Add the cream cheese to a large mixing bowl. Beat with a hand mixer on medium until combined.
- Add in the sugar is beat until incorporated.
- Add in the sour cream, egg, and vanilla and beat until the egg is completely worked into the cheesecake batter. Scrape down the bowl and beat in any bits that need mixed in.
- Scoop cheesecake batter on top of the baked pretzel crust, filling each section up.
- Place back in the preheated oven and bake for 20 minutes.
- Remove from oven and allow to cool to room temperature. Then place in the fridge to chill for at least 4 hours.
Topping
- Wash apple and core it. You can peel the apple if you would like.
- Dice the apple and place it into a small bowl.
- Add remaining ingredients and use a pastry cutter to incorporate all ingredients together.
- Bake for 15 minutes and allow to cool.
- Scoop apple crumble topping on each mini cheesecake. Serve and enjoy!
Nutrition
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